PlantTFDB
Plant Transcriptional Regulatory Map



1. cis-elements Back to Top


   1.1 DNase I hypersensitive sites (DHSs, DNase-seq)Back to Top

SpeciesOrganConditionDHS Peak
Arabidopsis thalianaflower14 daysdownload
Arabidopsis thalianaopen flowernormaldownload
Arabidopsis thalianainflorescencenormaldownload
Arabidopsis thalianaleafnormaldownload
Arabidopsis thalianarootnormaldownload
Arabidopsis thalianaroot7 daysdownload
Arabidopsis thalianaroot hair7 daysdownload
Arabidopsis thalianaroot non hair7 daysdownload
Arabidopsis thalianaroot non hair10 daysdownload
Arabidopsis thalianaseed coat4 days past anthesis rep1download
Arabidopsis thalianaseed coat4 days past anthesis rep2download
Arabidopsis thalianaseed coat7 days past anthesisdownload
Arabidopsis thalianaseedlingnormaldownload
Arabidopsis thalianaseedling7 day old Controldownload
Arabidopsis thalianaseedling7 day old Darkdownload
Arabidopsis thalianaseedling7 day old Dark 30min lightdownload
Arabidopsis thalianaseedling7 day old Dark 3hr lightdownload
Arabidopsis thalianaseedling7 day old Dark 24hrdownload
Arabidopsis thalianaseedling7 day old Heat Shockdownload
Arabidopsis thalianaseedlingBay-0 7 day olddownload
Arabidopsis thalianaseedlingBur-0 7 day olddownload
Arabidopsis thalianaseedlingEst-1 7 day olddownload
Arabidopsis thalianaseedlingTsu-1 7 day olddownload
Oryza sativa subsp. japonicacallus14 daysdownload
Oryza sativa subsp. japonicaseedling14 daysdownload

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   1.2 DNase I digital genomic footprinting (DGF, DNase-seq)Back to Top

SpeciesOrganConditionDGFRegulation
Arabidopsis thalianaroot7 daysdownloaddownload
Arabidopsis thalianaroot non hair7 daysdownloaddownload
Arabidopsis thalianaroot non hair10 daysdownloaddownload
Arabidopsis thalianaseed coat4 days past anthesisdownloaddownload
Arabidopsis thalianaseedling7 day old Controldownloaddownload
Arabidopsis thalianaseedling7 day old Darkdownloaddownload
Arabidopsis thalianaseedling7 day old Dark 30min lightdownloaddownload
Arabidopsis thalianaseedling7 day old Dark 3hr lightdownloaddownload
Arabidopsis thalianaseedling7 day old Dark 24hrdownloaddownload
Arabidopsis thalianaseedling7 day old Heat Shockdownloaddownload
Arabidopsis thalianaseedlingBay-0 7 day olddownloaddownload
Arabidopsis thalianaseedlingBur-0 7 day olddownloaddownload
Arabidopsis thalianaseedlingEst-1 7 day olddownloaddownload

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   1.3 Histone modifications (HMs, ChIP-seq)Back to Top

SpeciesOrganConditionTypePeak
Arabidopsis thalianaaerialtwo-week-oldH3K36me3download
Arabidopsis thalianaleafnormalH3K23acdownload
Arabidopsis thalianaleafnormalH4K16acdownload
Arabidopsis thalianarosette leafnormalH3K4me1download
Arabidopsis thalianarosette leafmature fully-expanded 29dH3K4me3download
Arabidopsis thalianarosette leafmature fully-expanded 35dH3K4me3download
Arabidopsis thalianarosette leafmature fully-expanded 42dH3K4me3download
Arabidopsis thalianarosette leafmature fully-expanded 57dH3K4me3download
Arabidopsis thalianarosette leafnormalH3K4me3download
Arabidopsis thalianarosette leafnormalH3K9acdownload
Arabidopsis thalianarosette leafmature fully-expanded 30dH3K9acdownload
Arabidopsis thalianarosette leafmature fully-expanded 34dH3K9acdownload
Arabidopsis thalianarosette leafmature fully-expanded 42dH3K9acdownload
Arabidopsis thalianarosette leafnormalH3T3phdownload
Arabidopsis thalianaseedling12DAG seedlingsH3K27me3download
Arabidopsis thalianaseedlingnormalH3K27me3download
Arabidopsis thalianaseedlingYoung seedlingsH3K27me3download
Arabidopsis thalianaseedling12DAG seedlingsH3K4me3download
Arabidopsis thalianashoot28DAG seedlingsH3K9me2download
Brassica napusleafnormalH3K4me3download
Chlamydomonas reinhardtiiwhole0 hr before starvationH3K27acdownload
Chlamydomonas reinhardtiiwholeNitrogen starvation 1 hrH3K27acdownload
Chlamydomonas reinhardtiiwholeSulfur starvation 1 hrH3K27acdownload
Chlamydomonas reinhardtiiwhole0 hr before starvationH3K36me3download
Chlamydomonas reinhardtiiwholeNitrogen starvation 1 hrH3K36me3download
Chlamydomonas reinhardtiiwholeSulfur starvation 1 hrH3K36me3download
Chlamydomonas reinhardtiiwhole0 hr before starvationH3K4me3download
Chlamydomonas reinhardtiiwholeNitrogen starvation 10 minH3K4me3download
Chlamydomonas reinhardtiiwholeNitrogen starvation 1 hrH3K4me3download
Chlamydomonas reinhardtiiwholeNitrogen starvation 24 hrH3K4me3download
Chlamydomonas reinhardtiiwholeNitrogen starvation 2 hrH3K4me3download
Chlamydomonas reinhardtiiwholeNitrogen starvation 30 minH3K4me3download
Chlamydomonas reinhardtiiwholeNitrogen starvation 48 hrH3K4me3download
Chlamydomonas reinhardtiiwholeNitrogen starvation 6 hrH3K4me3download
Chlamydomonas reinhardtiiwholeNitrogen starvation 8 hrH3K4me3download
Chlamydomonas reinhardtiiwholeSulfur starvation 1 hrH3K4me3download
Chlamydomonas reinhardtiiwhole0 hr before starvationH3K9me3download
Chlamydomonas reinhardtiiwholeNitrogen starvation 1 hrH3K9me3download
Chlamydomonas reinhardtiiwholeSulfur starvation 1 hrH3K9me3download
Eucalyptus grandissecondary xylemDevelopingH3K4me3download
Oryza sativa subsp. japonicaleafnormalH3K23acdownload
Oryza sativa subsp. japonicaleafnormalH4K16acdownload
Oryza sativa subsp. japonicaseedlingnormalH3K36me3download
Oryza sativa subsp. japonicaseedlingnormalH3K4me2download
Oryza sativa subsp. japonicaseedlingnormalH4K12acdownload

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   1.4 Nucleosome positioning (NP, MNase-seq)Back to Top

SpeciesOrganConditionPeak
Zea maysrootSeedling Root Heavy Rep 1download
Zea maysrootSeedling Root Heavy Rep 2download
Zea maysrootSeedling Root Light Rep 1download
Zea maysrootSeedling Root Light Rep 2download
Zea maysshootSeedling Shoot Heavy Rep 1download
Zea maysshootSeedling Shoot Heavy Rep 2download
Zea maysshootSeedling Shoot Light Rep 1download
Zea maysshootSeedling Shoot Light Rep 2download

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   1.5 TF binding sites (TFBSs, ChIP-seq)Back to Top

SpeciesTFOrganConditionPeakRegulation
Arabidopsis thalianaAT1G24260inflorescence5-7 weeks old rep1download
-
Arabidopsis thalianaAT4G18960inflorescencenormal rep1downloaddownload
Arabidopsis thalianaAT4G18960inflorescencenormal rep2downloaddownload
Arabidopsis thalianaAT1G22640seedlingABA treatment for 4hdownloaddownload
Arabidopsis thalianaAT1G22640seedlingnormaldownloaddownload
Arabidopsis thalianaAT1G49720seedlingABA treatment for 4hdownloaddownload
Arabidopsis thalianaAT1G49720seedlingnormaldownloaddownload
Arabidopsis thalianaAT1G49950seedlingnormal rep1downloaddownload
Arabidopsis thalianaAT1G49950seedlingnormal rep2downloaddownload
Arabidopsis thalianaAT1G51140seedlingABA treatment for 4hdownloaddownload
Arabidopsis thalianaAT1G51140seedlingnormaldownloaddownload
Arabidopsis thalianaAT1G56170seedlingABA treatment for 4hdownloaddownload
Arabidopsis thalianaAT1G56170seedlingnormaldownloaddownload
Arabidopsis thalianaAT1G77450seedlingABA treatment for 4hdownloaddownload
Arabidopsis thalianaAT1G77450seedlingnormaldownloaddownload
Arabidopsis thalianaAT2G01570seedlingnormal rep1downloaddownload
Arabidopsis thalianaAT2G01570seedlingnormal rep2downloaddownload
Arabidopsis thalianaAT2G01570seedlingnormal rep3downloaddownload
Arabidopsis thalianaAT2G22430seedlingABA treatment for 4hdownloaddownload
Arabidopsis thalianaAT2G22430seedlingnormaldownloaddownload
Arabidopsis thalianaAT2G43010seedlingnormal rep1downloaddownload
Arabidopsis thalianaAT2G43010seedlingnormal rep2downloaddownload
Arabidopsis thalianaAT2G43010seedlingnormal rep3downloaddownload
Arabidopsis thalianaAT2G43010seedlingnormal rep4downloaddownload
Arabidopsis thalianaAT2G43010seedlingnormal rep5downloaddownload
Arabidopsis thalianaAT2G46270seedlingABA treatment for 4hdownloaddownload
Arabidopsis thalianaAT2G46270seedlingnormaldownloaddownload
Arabidopsis thalianaAT2G46680seedlingABA treatment for 4hdownloaddownload
Arabidopsis thalianaAT2G46680seedlingnormaldownloaddownload
Arabidopsis thalianaAT2G46830seedlingnormal rep1download
-
Arabidopsis thalianaAT3G10480seedling12 day old rep1download
-
Arabidopsis thalianaAT3G10490seedling12 day old rep1download
-
Arabidopsis thalianaAT3G19290seedlingABA treatment for 4hdownloaddownload
Arabidopsis thalianaAT3G19290seedlingnormaldownloaddownload
Arabidopsis thalianaAT3G48430seedlingyoung seedlings rep1download
-
Arabidopsis thalianaAT3G59060seedlingnormal rep1downloaddownload
Arabidopsis thalianaAT3G59060seedlingnormal rep2downloaddownload
Arabidopsis thalianaAT4G01120seedlingABA treatment for 4hdownloaddownload
Arabidopsis thalianaAT4G01120seedlingnormaldownloaddownload
Arabidopsis thalianaAT4G27410seedlingABA treatment for 4hdownloaddownload
Arabidopsis thalianaAT4G27410seedlingnormaldownloaddownload
Arabidopsis thalianaAT4G34000seedlingABA treatment for 4hdownloaddownload
Arabidopsis thalianaAT4G34000seedlingnormaldownloaddownload
Arabidopsis thalianaAT4G37790seedlingABA treatment for 4hdownloaddownload
Arabidopsis thalianaAT4G37790seedlingnormaldownloaddownload
Arabidopsis thalianaAT5G04340seedlingABA treatment for 4hdownloaddownload
Arabidopsis thalianaAT5G04340seedlingnormaldownloaddownload
Arabidopsis thalianaAT5G04760seedlingABA treatment for 4hdownloaddownload
Arabidopsis thalianaAT5G04760seedlingnormaldownloaddownload
Arabidopsis thalianaAT5G05410seedlingABA treatment for 4hdownloaddownload
Arabidopsis thalianaAT5G05410seedlingnormaldownloaddownload
Arabidopsis thalianaAT5G18830seedlingnormal rep1download
-
Arabidopsis thalianaAT5G43840seedlingABA treatment for 4hdownloaddownload
Arabidopsis thalianaAT5G43840seedlingnormaldownloaddownload
Arabidopsis thalianaAT5G47640seedlingABA treatment for 4hdownloaddownload
Arabidopsis thalianaAT5G47640seedlingnormaldownloaddownload
Arabidopsis thalianaAT5G61850seedlingcomplete seedlings rep1downloaddownload
Arabidopsis thalianaAT5G61850seedlingcomplete seedlings rep2downloaddownload
Arabidopsis thalianaAT5G61850seedlingcomplete seedlings rep3downloaddownload
Arabidopsis thalianaAT5G61850seedlingcomplete seedlings rep4downloaddownload
Arabidopsis thalianaAT5G63790seedlingABA treatment for 4hdownloaddownload
Arabidopsis thalianaAT5G63790seedlingnormaldownloaddownload
Arabidopsis thalianaAT5G65310seedlingABA treatment for 4hdownloaddownload
Arabidopsis thalianaAT5G65310seedlingnormaldownloaddownload
Arabidopsis thalianaAT5G67300seedlingABA treatment for 4hdownloaddownload
Arabidopsis thalianaAT5G67300seedlingnormaldownloaddownload
Arabidopsis thalianaAT5G17430somatic embryo24-D induced somatic embryos rep1download
-
Zea maysGRMZM2G017087tasseltassel primordia rep1download
-

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   1.6 Conserved elements (CEs, comparative genomics)Back to Top

SpeciesConserved element
Aethionema arabicumdownload
Arabidopsis halleridownload
Arabidopsis lyratadownload
Arabidopsis thalianadownload
Arabis alpinadownload
Arachis duranensisdownload
Arachis ipaensisdownload
Boechera strictadownload
Brachypodium distachyondownload
Brachypodium staceidownload
Brassica napusdownload
Brassica oleraceadownload
Brassica rapadownload
Cajanus cajandownload
Camelina sativadownload
Capsella grandifloradownload
Capsella rubelladownload
Carica papayadownload
Cicer arietinumdownload
Dichanthelium oligosanthesdownload
Dorcoceras hygrometricumdownload
Eragrostis tefdownload
Eutrema salsugineumdownload
Fragaria vescadownload
Glycine maxdownload
Glycine sojadownload
Hordeum vulgaredownload
Leersia perrieridownload
Linum usitatissimumdownload
Lotus japonicusdownload
Manihot esculentadownload
Medicago truncatuladownload
Mimulus guttatusdownload
Morus notabilisdownload
Oropetium thomaeumdownload
Oryza brachyanthadownload
Oryza glaberrimadownload
Oryza longistaminatadownload
Oryza sativa subsp. japonicadownload
Panicum virgatumdownload
Phaseolus vulgarisdownload
Phyllostachys heterocycladownload
Populus trichocarpadownload
Prunus mumedownload
Prunus persicadownload
Pyrus bretschneideridownload
Raphanus sativusdownload
Ricinus communisdownload
Salix purpureadownload
Sesamum indicumdownload
Setaria italicadownload
Setaria viridisdownload
Sisymbrium iriodownload
Solanum lycopersicumdownload
Solanum tuberosumdownload
Sorghum bicolordownload
Tarenaya hasslerianadownload
Thellungiella parvuladownload
Trifolium pratensedownload
Utricularia gibbadownload
Vigna angularisdownload
Vigna radiatadownload
Zea maysdownload
Ziziphus jujubadownload
Zoysia pacificadownload

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   1.7 Predicted TFBSBack to Top

SpeciesIn promoter regionsGenome-wide
motif scanningmotif-CEFunTFBSmotif scanningmotif-CEFunTFBS
Actinidia chinensisdownload--download--
Aegilops tauschiidownload--download--
Aethionema arabicumdownloaddownloaddownloaddownloaddownloaddownload
Amaranthus hypochondriacusdownload--download--
Amborella trichopodadownload--download--
Ananas comosusdownload--download--
Aquilegia coeruleadownload--download--
Arabidopsis halleridownloaddownloaddownloaddownloaddownloaddownload
Arabidopsis lyratadownloaddownloaddownloaddownloaddownloaddownload
Arabidopsis thalianadownloaddownloaddownloaddownloaddownloaddownload
Arabis alpinadownloaddownloaddownloaddownloaddownloaddownload
Arachis duranensisdownloaddownloaddownloaddownloaddownloaddownload
Arachis ipaensisdownloaddownloaddownloaddownloaddownloaddownload
Auxenochlorella protothecoidesdownload--download--
Bathycoccus prasinosdownload--download--
Beta vulgarisdownload--download--
Boechera strictadownloaddownloaddownloaddownloaddownloaddownload
Brachypodium distachyondownloaddownloaddownloaddownloaddownloaddownload
Brachypodium staceidownloaddownloaddownloaddownloaddownloaddownload
Brassica napusdownloaddownloaddownloaddownloaddownloaddownload
Brassica oleraceadownloaddownloaddownloaddownloaddownloaddownload
Brassica rapadownloaddownloaddownloaddownloaddownloaddownload
Cajanus cajandownloaddownloaddownloaddownloaddownloaddownload
Camelina sativadownloaddownloaddownloaddownloaddownloaddownload
Cannabis sativadownload--download--
Capsella grandifloradownloaddownloaddownloaddownloaddownloaddownload
Capsella rubelladownloaddownloaddownloaddownloaddownloaddownload
Carica papayadownloaddownloaddownloaddownloaddownloaddownload
Castanea mollissimadownload--download--
Chlamydomonas reinhardtiidownload--download--
Chlorella variabilis NC64Adownload--download--
Cicer arietinumdownloaddownloaddownloaddownloaddownloaddownload
Citrus clementinadownload--download--
Citrus sinensisdownload--download--
Coccomyxa subellipsoidea C-169download--download--
Coffea canephoradownload--download--
Cucumis melodownload--download--
Cucumis sativusdownload--download--
Daucus carotadownload--download--
Dianthus caryophyllusdownload--download--
Dichanthelium oligosanthesdownloaddownloaddownloaddownloaddownloaddownload
Dorcoceras hygrometricumdownloaddownloaddownloaddownloaddownloaddownload
Dunaliella salinadownload--download--
Elaeis guineensisdownload--download--
Eragrostis tefdownloaddownloaddownloaddownloaddownloaddownload
Eucalyptus grandisdownload--download--
Eutrema salsugineumdownloaddownloaddownloaddownloaddownloaddownload
Fragaria vescadownloaddownloaddownloaddownloaddownloaddownload
Fragaria x ananassadownload--download--
Genlisea aureadownload--download--
Glycine maxdownloaddownloaddownloaddownloaddownloaddownload
Glycine sojadownloaddownloaddownloaddownloaddownloaddownload
Gonium pectoraledownload--download--
Gossypium raimondiidownload--download--
Hordeum vulgaredownloaddownloaddownloaddownloaddownloaddownload
Humulus lupulusdownload--download--
Jatropha curcasdownload--download--
Juglans regiadownload--download--
Kalanchoe laxifloradownload--download--
Kalanchoe marnierianadownload--download--
Leersia perrieridownloaddownloaddownloaddownloaddownloaddownload
Linum usitatissimumdownloaddownloaddownloaddownloaddownloaddownload
Lotus japonicusdownloaddownloaddownloaddownloaddownloaddownload
Malus domesticadownload--download--
Manihot esculentadownloaddownloaddownloaddownloaddownloaddownload
Marchantia polymorphadownload--download--
Medicago truncatuladownloaddownloaddownloaddownloaddownloaddownload
Micromonas pusilla CCMP1545download--download--
Micromonas sp. RCC299download--download--
Mimulus guttatusdownloaddownloaddownloaddownloaddownloaddownload
Monoraphidium neglectumdownload--download--
Morus notabilisdownloaddownloaddownloaddownloaddownloaddownload
Musa acuminatadownload--download--
Nicotiana sylvestrisdownload--download--
Nicotiana tabacumdownload--download--
Nicotiana tomentosiformisdownload--download--
Oropetium thomaeumdownloaddownloaddownloaddownloaddownloaddownload
Oryza barthiidownload--download--
Oryza brachyanthadownloaddownloaddownloaddownloaddownloaddownload
Oryza glaberrimadownloaddownloaddownloaddownloaddownloaddownload
Oryza glumaepatuladownload--download--
Oryza longistaminatadownloaddownloaddownloaddownloaddownloaddownload
Oryza meridionalisdownload--download--
Oryza nivaradownload--download--
Oryza punctatadownload--download--
Oryza rufipogondownload--download--
Oryza sativa subsp. indicadownload--download--
Oryza sativa subsp. japonicadownloaddownloaddownloaddownloaddownloaddownload
Ostreococcus lucimarinusdownload--download--
Ostreococcus sp. RCC809download--download--
Ostreococcus tauridownload--download--
Panicum virgatumdownloaddownloaddownloaddownloaddownloaddownload
Petunia axillarisdownload--download--
Petunia inflatadownload--download--
Phalaenopsis equestrisdownload--download--
Phaseolus vulgarisdownloaddownloaddownloaddownloaddownloaddownload
Phyllostachys heterocycladownloaddownloaddownloaddownloaddownloaddownload
Physcomitrella patensdownload--download--
Populus trichocarpadownloaddownloaddownloaddownloaddownloaddownload
Prunus mumedownloaddownloaddownloaddownloaddownloaddownload
Prunus persicadownloaddownloaddownloaddownloaddownloaddownload
Pseudotsuga menziesiidownload--download--
Pyrus bretschneideridownloaddownloaddownloaddownloaddownloaddownload
Raphanus raphanistrumdownload--download--
Raphanus sativusdownloaddownloaddownloaddownloaddownloaddownload
Ricinus communisdownloaddownloaddownloaddownloaddownloaddownload
Salix purpureadownloaddownloaddownloaddownloaddownloaddownload
Selaginella moellendorffiidownload--download--
Sesamum indicumdownloaddownloaddownloaddownloaddownloaddownload
Setaria italicadownloaddownloaddownloaddownloaddownloaddownload
Setaria viridisdownloaddownloaddownloaddownloaddownloaddownload
Sisymbrium iriodownloaddownloaddownloaddownloaddownloaddownload
Solanum lycopersicumdownloaddownloaddownloaddownloaddownloaddownload
Solanum melongenadownload--download--
Solanum pennelliidownload--download--
Solanum tuberosumdownloaddownloaddownloaddownloaddownloaddownload
Sorghum bicolordownloaddownloaddownloaddownloaddownloaddownload
Sphagnum fallaxdownload--download--
Spinacia oleraceadownload--download--
Spirodela polyrhizadownload--download--
Tarenaya hasslerianadownloaddownloaddownloaddownloaddownloaddownload
Thellungiella parvuladownloaddownloaddownloaddownloaddownloaddownload
Theobroma cacaodownload--download--
Trifolium pratensedownloaddownloaddownloaddownloaddownloaddownload
Triticum aestivumdownload--download--
Triticum urartudownload--download--
Utricularia gibbadownloaddownloaddownloaddownloaddownloaddownload
Vigna angularisdownloaddownloaddownloaddownloaddownloaddownload
Vigna radiatadownloaddownloaddownloaddownloaddownloaddownload
Vitis viniferadownload--download--
Volvox carteridownload--download--
Zea maysdownloaddownloaddownloaddownloaddownloaddownload
Ziziphus jujubadownloaddownloaddownloaddownloaddownloaddownload
Zostera marinadownload--download--
Zoysia pacificadownloaddownloaddownloaddownloaddownloaddownload

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2. Regulations/Networks Back to Top


SpeciesRegulation (motif scanning)Regulation (motif_CE)Regulation (FunTFBS)Regulation merged
Actinidia chinensisdownload--download
Aegilops tauschiidownload--download
Aethionema arabicumdownloaddownloaddownloaddownload
Amaranthus hypochondriacusdownload--download
Amborella trichopodadownload--download
Ananas comosusdownload--download
Aquilegia coeruleadownload--download
Arabidopsis halleridownloaddownloaddownloaddownload
Arabidopsis lyratadownloaddownloaddownloaddownload
Arabidopsis thalianadownloaddownloaddownloaddownload
Arabis alpinadownloaddownloaddownloaddownload
Arachis duranensisdownloaddownloaddownloaddownload
Arachis ipaensisdownloaddownloaddownloaddownload
Auxenochlorella protothecoidesdownload--download
Bathycoccus prasinosdownload--download
Beta vulgarisdownload--download
Boechera strictadownloaddownloaddownloaddownload
Brachypodium distachyondownloaddownloaddownloaddownload
Brachypodium staceidownloaddownloaddownloaddownload
Brassica napusdownloaddownloaddownloaddownload
Brassica oleraceadownloaddownloaddownloaddownload
Brassica rapadownloaddownloaddownloaddownload
Cajanus cajandownloaddownloaddownloaddownload
Camelina sativadownloaddownloaddownloaddownload
Cannabis sativadownload--download
Capsella grandifloradownloaddownloaddownloaddownload
Capsella rubelladownloaddownloaddownloaddownload
Carica papayadownloaddownloaddownloaddownload
Castanea mollissimadownload--download
Chlamydomonas reinhardtiidownload--download
Chlorella variabilis NC64Adownload--download
Cicer arietinumdownloaddownloaddownloaddownload
Citrus clementinadownload--download
Citrus sinensisdownload--download
Coccomyxa subellipsoidea C-169download--download
Coffea canephoradownload--download
Cucumis melodownload--download
Cucumis sativusdownload--download
Daucus carotadownload--download
Dianthus caryophyllusdownload--download
Dichanthelium oligosanthesdownloaddownloaddownloaddownload
Dorcoceras hygrometricumdownloaddownloaddownloaddownload
Dunaliella salinadownload--download
Elaeis guineensisdownload--download
Eragrostis tefdownloaddownloaddownloaddownload
Eucalyptus grandisdownload--download
Eutrema salsugineumdownloaddownloaddownloaddownload
Fragaria vescadownloaddownloaddownloaddownload
Fragaria x ananassadownload--download
Genlisea aureadownload--download
Glycine maxdownloaddownloaddownloaddownload
Glycine sojadownloaddownloaddownloaddownload
Gonium pectoraledownload--download
Gossypium raimondiidownload--download
Hordeum vulgaredownloaddownloaddownloaddownload
Humulus lupulusdownload--download
Jatropha curcasdownload--download
Juglans regiadownload--download
Kalanchoe laxifloradownload--download
Kalanchoe marnierianadownload--download
Leersia perrieridownloaddownloaddownloaddownload
Linum usitatissimumdownloaddownloaddownloaddownload
Lotus japonicusdownloaddownloaddownloaddownload
Malus domesticadownload--download
Manihot esculentadownloaddownloaddownloaddownload
Marchantia polymorphadownload--download
Medicago truncatuladownloaddownloaddownloaddownload
Micromonas pusilla CCMP1545download--download
Micromonas sp. RCC299download--download
Mimulus guttatusdownloaddownloaddownloaddownload
Monoraphidium neglectumdownload--download
Morus notabilisdownloaddownloaddownloaddownload
Musa acuminatadownload--download
Nicotiana sylvestrisdownload--download
Nicotiana tabacumdownload--download
Nicotiana tomentosiformisdownload--download
Oropetium thomaeumdownloaddownloaddownloaddownload
Oryza barthiidownload--download
Oryza brachyanthadownloaddownloaddownloaddownload
Oryza glaberrimadownloaddownloaddownloaddownload
Oryza glumaepatuladownload--download
Oryza longistaminatadownloaddownloaddownloaddownload
Oryza meridionalisdownload--download
Oryza nivaradownload--download
Oryza punctatadownload--download
Oryza rufipogondownload--download
Oryza sativa subsp. indicadownload--download
Oryza sativa subsp. japonicadownloaddownloaddownloaddownload
Ostreococcus lucimarinusdownload--download
Ostreococcus sp. RCC809download--download
Ostreococcus tauridownload--download
Panicum virgatumdownloaddownloaddownloaddownload
Petunia axillarisdownload--download
Petunia inflatadownload--download
Phalaenopsis equestrisdownload--download
Phaseolus vulgarisdownloaddownloaddownloaddownload
Phyllostachys heterocycladownloaddownloaddownloaddownload
Physcomitrella patensdownload--download
Populus trichocarpadownloaddownloaddownloaddownload
Prunus mumedownloaddownloaddownloaddownload
Prunus persicadownloaddownloaddownloaddownload
Pseudotsuga menziesiidownload--download
Pyrus bretschneideridownloaddownloaddownloaddownload
Raphanus raphanistrumdownload--download
Raphanus sativusdownloaddownloaddownloaddownload
Ricinus communisdownloaddownloaddownloaddownload
Salix purpureadownloaddownloaddownloaddownload
Selaginella moellendorffiidownload--download
Sesamum indicumdownloaddownloaddownloaddownload
Setaria italicadownloaddownloaddownloaddownload
Setaria viridisdownloaddownloaddownloaddownload
Sisymbrium iriodownloaddownloaddownloaddownload
Solanum lycopersicumdownloaddownloaddownloaddownload
Solanum melongenadownload--download
Solanum pennelliidownload--download
Solanum tuberosumdownloaddownloaddownloaddownload
Sorghum bicolordownloaddownloaddownloaddownload
Sphagnum fallaxdownload--download
Spinacia oleraceadownload--download
Spirodela polyrhizadownload--download
Tarenaya hasslerianadownloaddownloaddownloaddownload
Thellungiella parvuladownloaddownloaddownloaddownload
Theobroma cacaodownload--download
Trifolium pratensedownloaddownloaddownloaddownload
Triticum aestivumdownload--download
Triticum urartudownload--download
Utricularia gibbadownloaddownloaddownloaddownload
Vigna angularisdownloaddownloaddownloaddownload
Vigna radiatadownloaddownloaddownloaddownload
Vitis viniferadownload--download
Volvox carteridownload--download
Zea maysdownloaddownloaddownloaddownload
Ziziphus jujubadownloaddownloaddownloaddownload
Zostera marinadownload--download
Zoysia pacificadownloaddownloaddownloaddownload

3. GO annotation Back to Top


SpeciesGO annotationGene2go
Arabis alpinadownloaddownload
Artemisia annuadownloaddownload
Aethionema arabicumdownloaddownload
Actinidia chinensisdownloaddownload
Ananas comosusdownloaddownload
Aquilegia coeruleadownloaddownload
Arachis duranensisdownloaddownload
Arabidopsis halleridownloaddownload
Amaranthus hypochondriacusdownloaddownload
Arachis hypogaeadownloaddownload
Azadirachta indicadownloaddownload
Arachis ipaensisdownloaddownload
Arabidopsis lyratadownloaddownload
Auxenochlorella protothecoidesdownloaddownload
Aegilops tauschiidownloaddownload
Arabidopsis thalianadownloaddownload
Amborella trichopodadownloaddownload
Brachypodium distachyondownloaddownload
Brassica napusdownloaddownload
Brassica oleraceadownloaddownload
Bathycoccus prasinosdownloaddownload
Brassica rapadownloaddownload
Brachypodium staceidownloaddownload
Boechera strictadownloaddownload
Beta vulgarisdownloaddownload
Capsicum annuumdownloaddownload
Cicer arietinumdownloaddownload
Camelina sativadownloaddownload
Cajanus cajandownloaddownload
Citrus clementinadownloaddownload
Coffea canephoradownloaddownload
Capsella grandifloradownloaddownload
Citrullus lanatusdownloaddownload
Cucumis melodownloaddownload
Castanea mollissimadownloaddownload
Chlorella variabilis NC64Adownloaddownload
Carica papayadownloaddownload
Chlamydomonas reinhardtiidownloaddownload
Catharanthus roseusdownloaddownload
Capsella rubelladownloaddownload
Cannabis sativadownloaddownload
Coccomyxa subellipsoidea C-169downloaddownload
Cucumis sativusdownloaddownload
Citrus sinensisdownloaddownload
Daucus carotadownloaddownload
Dianthus caryophyllusdownloaddownload
Dorcoceras hygrometricumdownloaddownload
Dichanthelium oligosanthesdownloaddownload
Dunaliella salinadownloaddownload
Eucalyptus camaldulensisdownloaddownload
Eucalyptus grandisdownloaddownload
Elaeis guineensisdownloaddownload
Eutrema salsugineumdownloaddownload
Eragrostis tefdownloaddownload
Fragaria x ananassadownloaddownload
Fragaria vescadownloaddownload
Gossypium arboreumdownloaddownload
Genlisea aureadownloaddownload
Gossypium hirsutumdownloaddownload
Glycine maxdownloaddownload
Gonium pectoraledownloaddownload
Gossypium raimondiidownloaddownload
Glycine sojadownloaddownload
Helianthus annuusdownloaddownload
Helicosporidiumdownloaddownload
Humulus lupulusdownloaddownload
Hordeum vulgaredownloaddownload
Ipomoea trifidadownloaddownload
Jatropha curcasdownloaddownload
Juglans regiadownloaddownload
Klebsormidium flaccidumdownloaddownload
Kalanchoe laxifloradownloaddownload
Kalanchoe marnierianadownloaddownload
Lotus japonicusdownloaddownload
Leersia perrieridownloaddownload
Lactuca sativadownloaddownload
Linum usitatissimumdownloaddownload
Musa acuminatadownloaddownload
Malus domesticadownloaddownload
Manihot esculentadownloaddownload
Mimulus guttatusdownloaddownload
Monoraphidium neglectumdownloaddownload
Morus notabilisdownloaddownload
Marchantia polymorphadownloaddownload
Micromonas pusilla CCMP1545downloaddownload
Micromonas sp. RCC299downloaddownload
Medicago truncatuladownloaddownload
Nicotiana benthamianadownloaddownload
Nelumbo nuciferadownloaddownload
Nicotiana sylvestrisdownloaddownload
Nicotiana tabacumdownloaddownload
Nicotiana tomentosiformisdownloaddownload
Oryza barthiidownloaddownload
Oryza brachyanthadownloaddownload
Oryza glaberrimadownloaddownload
Oryza glumaepatuladownloaddownload
Oryza longistaminatadownloaddownload
Ostreococcus lucimarinusdownloaddownload
Oryza meridionalisdownloaddownload
Oryza nivaradownloaddownload
Oryza punctatadownloaddownload
Ostreococcus sp. RCC809downloaddownload
Oryza rufipogondownloaddownload
Oryza sativa subsp. indicadownloaddownload
Oryza sativa subsp. japonicadownloaddownload
Ostreococcus tauridownloaddownload
Ocimum tenuiflorumdownloaddownload
Oropetium thomaeumdownloaddownload
Picea abiesdownloaddownload
Petunia axillarisdownloaddownload
Pyrus bretschneideridownloaddownload
Phoenix dactyliferadownloaddownload
Phalaenopsis equestrisdownloaddownload
Populus euphraticadownloaddownload
Picea glaucadownloaddownload
Panicum halliidownloaddownload
Phyllostachys heterocycladownloaddownload
Petunia inflatadownloaddownload
Pseudotsuga menziesiidownloaddownload
Prunus mumedownloaddownload
Physcomitrella patensdownloaddownload
Prunus persicadownloaddownload
Picochlorum sp. SENEW3downloaddownload
Picea sitchensisdownloaddownload
Pinus taedadownloaddownload
Populus trichocarpadownloaddownload
Panicum virgatumdownloaddownload
Phaseolus vulgarisdownloaddownload
Ricinus communisdownloaddownload
Raphanus raphanistrumdownloaddownload
Raphanus sativusdownloaddownload
Sorghum bicolordownloaddownload
Sphagnum fallaxdownloaddownload
Sesamum indicumdownloaddownload
Sisymbrium iriodownloaddownload
Setaria italicadownloaddownload
Solanum lycopersicumdownloaddownload
Solanum melongenadownloaddownload
Salvia miltiorrhizadownloaddownload
Selaginella moellendorffiidownloaddownload
Saccharum officinarumdownloaddownload
Spinacia oleraceadownloaddownload
Solanum pennelliidownloaddownload
Solanum pimpinellifoliumdownloaddownload
Spirodela polyrhizadownloaddownload
Salix purpureadownloaddownload
Solanum tuberosumdownloaddownload
Setaria viridisdownloaddownload
Triticum aestivumdownloaddownload
Theobroma cacaodownloaddownload
Tarenaya hasslerianadownloaddownload
Thellungiella parvuladownloaddownload
Trifolium pratensedownloaddownload
Triticum urartudownloaddownload
Utricularia gibbadownloaddownload
Vigna angularisdownloaddownload
Volvox carteridownloaddownload
Vigna radiatadownloaddownload
Vigna unguiculatadownloaddownload
Vitis viniferadownloaddownload
Zoysia japonicadownloaddownload
Ziziphus jujubadownloaddownload
Zea maysdownloaddownload
Zostera marinadownloaddownload
Zoysia matrelladownloaddownload
Zoysia pacificadownloaddownload

4. ID mapping Back to Top


SpeciesID mapping file
Arabis alpinadownload
Artemisia annuadownload
Aethionema arabicumdownload
Actinidia chinensisdownload
Ananas comosusdownload
Aquilegia coeruleadownload
Arachis duranensisdownload
Arabidopsis halleridownload
Amaranthus hypochondriacusdownload
Arachis hypogaeadownload
Azadirachta indicadownload
Arachis ipaensisdownload
Arabidopsis lyratadownload
Auxenochlorella protothecoidesdownload
Aegilops tauschiidownload
Arabidopsis thalianadownload
Amborella trichopodadownload
Brachypodium distachyondownload
Brassica napusdownload
Brassica oleraceadownload
Bathycoccus prasinosdownload
Brassica rapadownload
Boechera strictadownload
Beta vulgarisdownload
Capsicum annuumdownload
Cicer arietinumdownload
Camelina sativadownload
Cajanus cajandownload
Citrus clementinadownload
Coffea canephoradownload
Capsella grandifloradownload
Citrullus lanatusdownload
Cucumis melodownload
Castanea mollissimadownload
Chlorella variabilis NC64Adownload
Carica papayadownload
Chlamydomonas reinhardtiidownload
Catharanthus roseusdownload
Capsella rubelladownload
Cannabis sativadownload
Coccomyxa subellipsoidea C-169download
Cucumis sativusdownload
Citrus sinensisdownload
Daucus carotadownload
Dianthus caryophyllusdownload
Dorcoceras hygrometricumdownload
Dunaliella salinadownload
Eucalyptus camaldulensisdownload
Eucalyptus grandisdownload
Elaeis guineensisdownload
Eutrema salsugineumdownload
Eragrostis tefdownload
Fragaria x ananassadownload
Fragaria vescadownload
Gossypium arboreumdownload
Genlisea aureadownload
Gossypium hirsutumdownload
Glycine maxdownload
Gonium pectoraledownload
Gossypium raimondiidownload
Glycine sojadownload
Helianthus annuusdownload
Humulus lupulusdownload
Hordeum vulgaredownload
Ipomoea trifidadownload
Jatropha curcasdownload
Juglans regiadownload
Klebsormidium flaccidumdownload
Lotus japonicusdownload
Leersia perrieridownload
Lactuca sativadownload
Linum usitatissimumdownload
Musa acuminatadownload
Malus domesticadownload
Manihot esculentadownload
Mimulus guttatusdownload
Monoraphidium neglectumdownload
Morus notabilisdownload
Marchantia polymorphadownload
Micromonas pusilla CCMP1545download
Micromonas sp. RCC299download
Medicago truncatuladownload
Nicotiana benthamianadownload
Nelumbo nuciferadownload
Nicotiana sylvestrisdownload
Nicotiana tabacumdownload
Nicotiana tomentosiformisdownload
Oryza barthiidownload
Oryza brachyanthadownload
Oryza glaberrimadownload
Oryza glumaepatuladownload
Oryza longistaminatadownload
Ostreococcus lucimarinusdownload
Oryza meridionalisdownload
Oryza nivaradownload
Oryza punctatadownload
Oryza rufipogondownload
Oryza sativa subsp. indicadownload
Oryza sativa subsp. japonicadownload
Ostreococcus tauridownload
Ocimum tenuiflorumdownload
Picea abiesdownload
Petunia axillarisdownload
Pyrus bretschneideridownload
Phoenix dactyliferadownload
Phalaenopsis equestrisdownload
Populus euphraticadownload
Picea glaucadownload
Phyllostachys heterocycladownload
Petunia inflatadownload
Pseudotsuga menziesiidownload
Prunus mumedownload
Physcomitrella patensdownload
Prunus persicadownload
Picea sitchensisdownload
Pinus taedadownload
Populus trichocarpadownload
Panicum virgatumdownload
Phaseolus vulgarisdownload
Ricinus communisdownload
Raphanus raphanistrumdownload
Raphanus sativusdownload
Sorghum bicolordownload
Sphagnum fallaxdownload
Sesamum indicumdownload
Sisymbrium iriodownload
Setaria italicadownload
Solanum lycopersicumdownload
Solanum melongenadownload
Salvia miltiorrhizadownload
Selaginella moellendorffiidownload
Saccharum officinarumdownload
Spinacia oleraceadownload
Solanum pennelliidownload
Solanum pimpinellifoliumdownload
Spirodela polyrhizadownload
Salix purpureadownload
Solanum tuberosumdownload
Setaria viridisdownload
Triticum aestivumdownload
Theobroma cacaodownload
Tarenaya hasslerianadownload
Thellungiella parvuladownload
Trifolium pratensedownload
Triticum urartudownload
Vigna angularisdownload
Volvox carteridownload
Vigna radiatadownload
Vigna unguiculatadownload
Vitis viniferadownload
Zoysia japonicadownload
Ziziphus jujubadownload
Zea maysdownload
Zostera marinadownload
Zoysia matrelladownload

5. Gene sequences Back to Top


SpeciesPromoterCDSProtein
Arabis alpinadownloaddownloaddownload
Aethionema arabicumdownloaddownloaddownload
Actinidia chinensisdownloaddownloaddownload
Ananas comosusdownloaddownloaddownload
Aquilegia coeruleadownloaddownloaddownload
Arachis duranensisdownloaddownloaddownload
Arabidopsis halleridownloaddownloaddownload
Amaranthus hypochondriacusdownloaddownloaddownload
Arachis ipaensisdownloaddownloaddownload
Arabidopsis lyratadownloaddownloaddownload
Auxenochlorella protothecoidesdownloaddownloaddownload
Aegilops tauschiidownloaddownloaddownload
Arabidopsis thalianadownloaddownloaddownload
Amborella trichopodadownloaddownloaddownload
Brachypodium distachyondownloaddownloaddownload
Brassica napusdownloaddownloaddownload
Brassica oleraceadownloaddownloaddownload
Brassica rapadownloaddownloaddownload
Brachypodium staceidownloaddownloaddownload
Boechera strictadownloaddownloaddownload
Beta vulgarisdownloaddownloaddownload
Cicer arietinumdownloaddownloaddownload
Camelina sativadownloaddownloaddownload
Cajanus cajandownloaddownloaddownload
Citrus clementinadownloaddownloaddownload
Coffea canephoradownloaddownloaddownload
Capsella grandifloradownloaddownloaddownload
Cucumis melodownloaddownloaddownload
Castanea mollissimadownloaddownloaddownload
Chlorella variabilis NC64Adownloaddownloaddownload
Carica papayadownloaddownloaddownload
Chlamydomonas reinhardtiidownloaddownloaddownload
Capsella rubelladownloaddownloaddownload
Coccomyxa subellipsoidea C-169downloaddownloaddownload
Cucumis sativusdownloaddownloaddownload
Citrus sinensisdownloaddownloaddownload
Daucus carotadownloaddownloaddownload
Dianthus caryophyllusdownloaddownloaddownload
Dorcoceras hygrometricumdownloaddownloaddownload
Dichanthelium oligosanthesdownloaddownloaddownload
Dunaliella salinadownloaddownloaddownload
Eucalyptus grandisdownloaddownloaddownload
Elaeis guineensisdownloaddownloaddownload
Eutrema salsugineumdownloaddownloaddownload
Eragrostis tefdownloaddownloaddownload
Fragaria vescadownloaddownloaddownload
Genlisea aureadownloaddownloaddownload
Glycine maxdownloaddownloaddownload
Gonium pectoraledownloaddownloaddownload
Gossypium raimondiidownloaddownloaddownload
Glycine sojadownloaddownloaddownload
Humulus lupulusdownloaddownloaddownload
Hordeum vulgaredownloaddownloaddownload
Jatropha curcasdownloaddownloaddownload
Juglans regiadownloaddownloaddownload
Kalanchoe laxifloradownloaddownloaddownload
Kalanchoe marnierianadownloaddownloaddownload
Lotus japonicusdownloaddownloaddownload
Leersia perrieridownloaddownloaddownload
Linum usitatissimumdownloaddownloaddownload
Musa acuminatadownloaddownloaddownload
Malus domesticadownloaddownloaddownload
Manihot esculentadownloaddownloaddownload
Mimulus guttatusdownloaddownloaddownload
Monoraphidium neglectumdownloaddownloaddownload
Morus notabilisdownloaddownloaddownload
Marchantia polymorphadownloaddownloaddownload
Micromonas pusilla CCMP1545downloaddownloaddownload
Micromonas sp. RCC299downloaddownloaddownload
Medicago truncatuladownloaddownloaddownload
Nicotiana sylvestrisdownloaddownloaddownload
Nicotiana tabacumdownloaddownloaddownload
Nicotiana tomentosiformisdownloaddownloaddownload
Oryza barthiidownloaddownloaddownload
Oryza brachyanthadownloaddownloaddownload
Oryza glaberrimadownloaddownloaddownload
Oryza glumaepatuladownloaddownloaddownload
Oryza longistaminatadownloaddownloaddownload
Ostreococcus lucimarinusdownloaddownloaddownload
Oryza meridionalisdownloaddownloaddownload
Oryza nivaradownloaddownloaddownload
Oryza punctatadownloaddownloaddownload
Ostreococcus sp. RCC809downloaddownloaddownload
Oryza rufipogondownloaddownloaddownload
Oryza sativa subsp. indicadownloaddownloaddownload
Oryza sativa subsp. japonicadownloaddownloaddownload
Ostreococcus tauridownloaddownloaddownload
Oropetium thomaeumdownloaddownloaddownload
Petunia axillarisdownloaddownloaddownload
Phalaenopsis equestrisdownloaddownloaddownload
Phyllostachys heterocycladownloaddownloaddownload
Petunia inflatadownloaddownloaddownload
Pseudotsuga menziesiidownloaddownloaddownload
Prunus mumedownloaddownloaddownload
Physcomitrella patensdownloaddownloaddownload
Prunus persicadownloaddownloaddownload
Populus trichocarpadownloaddownloaddownload
Panicum virgatumdownloaddownloaddownload
Phaseolus vulgarisdownloaddownloaddownload
Ricinus communisdownloaddownloaddownload
Raphanus raphanistrumdownloaddownloaddownload
Raphanus sativusdownloaddownloaddownload
Sorghum bicolordownloaddownloaddownload
Sphagnum fallaxdownloaddownloaddownload
Sesamum indicumdownloaddownloaddownload
Sisymbrium iriodownloaddownloaddownload
Setaria italicadownloaddownloaddownload
Solanum lycopersicumdownloaddownloaddownload
Solanum melongenadownloaddownloaddownload
Selaginella moellendorffiidownloaddownloaddownload
Spinacia oleraceadownloaddownloaddownload
Solanum pennelliidownloaddownloaddownload
Spirodela polyrhizadownloaddownloaddownload
Salix purpureadownloaddownloaddownload
Solanum tuberosumdownloaddownloaddownload
Setaria viridisdownloaddownloaddownload
Triticum aestivumdownloaddownloaddownload
Theobroma cacaodownloaddownloaddownload
Tarenaya hasslerianadownloaddownloaddownload
Trifolium pratensedownloaddownloaddownload
Triticum urartudownloaddownloaddownload
Utricularia gibbadownloaddownloaddownload
Vigna angularisdownloaddownloaddownload
Volvox carteridownloaddownloaddownload
Vigna radiatadownloaddownloaddownload
Vitis viniferadownloaddownloaddownload
Ziziphus jujubadownloaddownloaddownload
Zea maysdownloaddownloaddownload
Zostera marinadownloaddownloaddownload
Zoysia pacificadownloaddownloaddownload

6. Orthologous groups (OGs) Back to Top



7. BLAST reciprocal best hits Back to Top


You can download the data either via our ftp server or via the button bellow.

the RBH result between and


8. Comparative genomics Back to Top


8.1 Pairwise alignments

Group:
Target species:    Query species:  Type :    
Also you can download the pairwise alignments data via our ftp server.

 

8.2 Multiple alignments

Reference species:    

8.3 Sequence conservation score

Reference species:    Type:    

View the data source related to comparative genomics